I won't claim to be an expert, my opinions are just that and based solely on my own hearing and tastes. My qualification:
I did not have a bias mod performed on any of these amps. Common wisdom is that it should be done whichever one you own. With JJ KT88s, my 400 sounded very similar to my 400+, probably impossible to tell the difference in a band setting. My 400+ was very clean, but had a "flavored" or "colored" sound which was great for rock. All these amps, and even the Mpulse head I tried out have something of this flavor. My 400+ did not noticeably break up in normal use, with the Master at 3-5, CH1 at 4 and CH 2 at 2-3. Cranking the preamp volumes produced some pretty bad sounding distortion.
With 6L6s, the 400 sounded less full than the 400+ or the 400 with Kt88s. Not thin, but thinner. Still good though. It broke up much earlier, becoming tough to keep clean at loud volumes. Sounded awesome though, mean roaring distortion. For this reason I preferred it to the 400+, even though it only goes down to 4 Ohms where the + goes to 2. I have heard reports though that it is safe to run a 400 at 2 Ohms, but I never did it for an extended time. Worked fine for the hour I tried it though.
Regarding the low end comment, I was not happy with the performance of the 400+ with my 5 string, which is tuned down a step to a low A. I can't say for sure how much was the amp and how much was the speakers, since I changed the whole rig once I got into 5 string playing. I'd been using Ampeg and Mesa 15"s which sounded great with the 400+ for 4 string playing, awesome midrange and bite, but didn't convey the lows very well. I switched to something more powerful and clear sounding. For a while I used a solid state amp for the lows, which worked well but made for a complicated setup.