Hey no problem
The traditional method you will see around the internet is to tune the 12th fret note to the 2nd harmonic of the open note. This is a method without using a tuner, however the open note and it's 2nd harmonic are often slightly out of tune with fret 1, also it's more precise to actually use a tuner.
So this is my method. When checking the tuning of a string you'll notice the pitch goes sharp on the attack and then settles back down over a couple of seconds, it's the settled pitch you should take notice of. EDIT: See post below.
Tune fret 1. Then observe the tuning of every other fret (or every 3rd or 4th fret) up to the highest fret ...
As you proceed up the frets, if the tuning gradually becomes sharper, move the saddle away from the neck. If it gradually becomes flatter, move the saddle toward the neck. When moving the saddle, detune the string until it is almost completely loose, to let the saddle move freely. Moving the saddle by a millimetre is a fairly large adjustment.
With fret 1 tuned, you may find the open note is slightly out of tune, especially on the thicker strings. It helps to push down on the string either side of the nut to form a kink in the string as it passes over the nut, instead of a curve. If this doesn't solve the problem then IMO it's more important to get the frets in tune than the open note.