I adjusted the pickup heights and it sounds even better!
The neck pickup came from the factory sitting very low in its rout. With the string depressed at the last fret it had more than 6/32" of clearance to the string on the bass side. The bridge pickup had just over 4/32". I adjusted the neck pickup to have the same clearane as the bridge and BAM!
All of the combined positions sound stronger and more consistent with the bridge pickup sound now. Man this thing sounds HUGE! Position 2 especially opened up.
Does anybody know what the "factory correct" settings are?