The official family site has these marked with a big red "bootleg" on every album :
Pastorius - Live in New York City, Vol. 1: Punk Jazz Big World 1001 (1990 release) Bootleg
Tracks: Donna Lee, Dania, Teen Town, The Chicken, Invitation, N.Y.C. Groove #1, Punk Jazz, Liberty City
with: Hiram Bullock, Kenwood Dennard, Alex Foster, Butch Thomas, Delmar Brown, Michael Gerber, Jerry Gonzalez
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Pastorius - Live in New York City, Vol. 2: Trio Big World 1002 (1991 release) Bootleg
Tracks: Wipe Out, Straight Life, I Shot The Sheriff, Teen Town, Dear Prudence, Ode To Billie Joe, Continuum, Son Of Creeper, Cissy Strut, Three Views Of A Secret
with: Kenwood Dennard, Hiram Bullock
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Pastorius - Live in New York City, Vol. 3: Promise Land Big World 1003 (1991 release) Bootleg
Tracks: Bass & Percussion Intro, Continuum, N.Y.C. Groove #2, Teen Town, Alfie, Why I Sing The Blues, Promise Land, If You Could See Me Now, Naima
with: Kenwood Dennard, Hiram Bullock, Alex Foster, Butch Thomas, Delmar Brown, Jerry Gonzalez, Michael Gerber
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Pastorius - Live in New York City, Vol. 4: Trio 2 Big World 1004 (1992 release) Bootleg
Tracks: Fannie Mae, Dolphin Dance, Teen Town, Mercy Mercy Mercy, Freedom Jazz Dance, Late Night Talk With You, Equinox, The Medley: Changes, Purple Haze, Simple Song
with: Hiram Bullock, Victor Lewis, Steve Ferrone, Kenwood Dennard
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Jaco Pastorius in New York Jazz Door Records (1993 release, double CD) Bootleg
Tracks: Tracks identical to selections found on Live In New York vol 1-4: Dania, I Shot The Sheriff, Punk Jazz, Promise Land, Teen Town, Dear Prudence, Why I Sing The Blues, N.Y.C. Blues #2, Son Of Creeper, Invitation, Three Views Of A Secret, Naima, Continuum
with: Kenwood Dennard, Hiram Bullock, Alex Foster, Butch Thomas, Delmar Brown, Jerry Gonzalez, Michael Gerber
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Pastorius - Live in New York City, Vol. 5: Raca Big World 1005 (1997 release) Bootleg
Tracks: Blackbird, Continuum, Mood Swings, After You, Sly Shuffle, Raca, Teen Town, Three Women, Good Morning Anya
with: Mike Stern, Steve Slagle, Adam Nussbaum
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Pastorius - Live in New York City, Vol. 6: Punk Jazz 2 Big World 1006 (1999 release) Bootleg
Tracks: Amerika, Beaver Patrol, If You Could See Me Now, Dania, Dolphin Dance, Fannie Mae, Teen Town
with: Hiram Bullock, Kenwood Dennard, Alex Foster, Butch Thomas, Jerry Gonzalez, Delmar Brown, Michael Gerber
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Pastorius - Live in New York City, Vol. 7: History Big World 1007 (1999 release) Bootleg
Tracks: Bass Solo/Amerika, Continuum, Straight Life, Teen Town, Dolphin Dance, Agaya, History, Three Views of a Secret
with: Hiram Bullock, Victor Lewis
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Francisco Mondragon Rio featuring Jaco Pastorius - Natural Pulque (vinyl) and DIW 321 (1988 Japan) Bootleg
Tracks: Jaco plays on three of four tracks: Phlegeton, The Foreigner, Leap Frog
with: Francisco Mondragon Rio, Yaco G. Grau, Hugh Peterson
http://www.jacopastorius.com/music/discography/1985.asp