I'm not exactly a pro myself for I haven't been playing bass long myself, and by the time this response comes through you may have already received your amp and figured it out before I say this, but...
Playing acoustically with a low action (dropped strings) will inevitably cause fret buzz/"clanking". On your amp, these sounds will be manifested SLIGHTLY depending on your EQ settings. If your treble is high, the clanking will ring through louder, especially if the amp has a tweeter. If your treble is all the way down and the bass is all the way up, you will hear virtually zero effect from the "clickity clack". However, if you may as I did, become accustomed to and begin to like the clacking, you won't care about it anyway.

So no, it won't affect you if you just turn the high frequencies down a bit on your amp and/or bass.