When I had a ton of pedals, the answer was to have a pedalboard patch kit where you cut and made your own cables. I'd recommend George L's personally.
Here is an example of what I did with my board some years back to be able to get everything to fit:

That horrendous looking tangle of wires underneath was due to very long cable runs because I needed specific pedals either near my feet, or because of the way that the board fit together.
Additionally, This let me have a custom signal chain without sacrificing space with the usually pitifully too short pre-made patch cables.
I got rid of this setup a long time ago, but still use the George L's on my nice light little mini board.
