I'm no expert, but it sounds like you might be putting some kind of signal voltage overload onto your amp that it either doesnt like, or some kind of electronic component that handles the voltage in the input circuit has failed or become disconnected.
There might be some kind of breaker that is reading the pedal voltage as an overload and shutting down as a protective measure.
See if you can get into the amp through the effects input, bypassing the main input.
Thats pretty vague and generalized, but given the performance of the variables with the other amp, its gotta be in your head. (No pun intended)
