Hi Kim,
I think it's important to divide your practice time up, so as not to end up with it unequally weighted in one direction - it's no use having great intonation if your timing is out... etc...
the five Ts are a good starting place for getting your playing together - consider each of them for each note/phrase/line/solo/whatever.
they are (make a note!)
Timing
Tuning
Tone
Taste
Technique
you can have great technique in terms of playing fast and clean, but have no tone. You can have a great sound but no idea what to do with it, you can have the greatest feel in the world, but not get within a mile of each note... None of these are really where you want to end up.
So in terms of ordering your practice time. I'd work on two main areas (for each of the above) - control and awareness - developing an awareness of what you're doing, what you want to do and what you're supposed to do, and then working on the control needed to execute that. So that covers everything!
Start with a phrase, of any kind, play it slowly, as slowly as you like, but focus on the sound of every note, the attack, the decay, the shift to the next note. Get right inside each note. Feel free to allow each note to last ages. If your serious about this stuff, practice can become a meditational pursuit, where you are working on your connection with sound, and your control of it. Remember that everything between your fingers and the vibrating air that comes out of the speaker is your instrument - all of it colours the sound and you to know it as well as you can, so you can do what you want to do with it.
So, take your phrase, play it til it's you. Til every note is where it should be, til you can FEEL each note before it happens, til there are no surprises. Then change your intention, and work until you can do that one too, til you know it, control it, own it. See how many parameters you can control just with your hands, how far you can stretch each one. The bring in the controls on your bass, then your amp, the rest of your signal chain...
The aim is music, the tool is bass, the path is the pursuit of control and awareness...
...sorry, you just caught me in a particularly philosophical mood - I'm really glad you asked this, cos I soooo need to get back into all the stuff I've talked about above - so we'll both report back here in a month, and see how we've got on?
hope that all makes sense - if not, feel free to come back with more...
cheers!
Steve
www.stevelawson.net