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I always turn off all my pedals (except the comp which doesn't shift the pitch) when I tune between songs anyway. Also, my bass is active so signal loss is not an issue.I would always put the tuner first so it gets the cleanest signal.
It's not signal loss that's the concern, it's the possibility of pitch-changing affects (chorus, phasers, etc.) could screw up the tuning - not a problem if you turn off the other pedals.I always turn off all my pedals (except the comp which doesn't shift the pitch) when I tune between songs anyway. Also, my bass is active so signal loss is not an issue.
I'm asking because I don't understand anything about electronicsWhat makes you ask? I don't see any reason it should hurt the pedals, but it is bad for your speakers if you aren't muting your signal somewhere along the chain.