On the last point - I didn't bring this up to see if I could improve it or anything like that. I'm interested in how the components affect the output just to better understand how/why the output of my bass changes as I fiddle with the knobs. I just started playing bass again after 20+ years without one (played a little back in high school). I'm finding that I'm a bit overwhelmed by all the knobs on my bass and amp. Seems like I endlessly cycle through various settings on knobs trying to find satisfying sounds. Probably need to start taking notes. But anyway, I think if I better understand how they work, the settings will start to make more sense. I think the way the EQ knobs and Gain/Volume are clear enough. Still having a little trouble understanding the notch filter, and then the interaction of the 3 knobs on my bass need some clarification in my mind. This discussion has helped with that.
To further enhance/confuse your understanding, the pots in your bass are most likely logarithmic taper, not linear taper. Turning a volume down from 10 to 9 will have a larger volume drop than from 9 to 8, etc.
And, the Tone knob is a basic low pass filter, not a notch filter. As you decrease the resistance on the tone pot, more and more highs are filtered to ground, leaving only the bass frequencies at the output.