Turn your gain & master volume off, hit your strings as hard as you are ever going to hit them while gradually turning the gain up. As soon as the clip light, lights up back it off a little bit. Now you can crank your volume as much as you want & you won't ever clip.
Note: Whenever you ad eq on your bass or your amp past your normal setting you might have to roll back a little of the gain again. Same goes with if you use pedals. You either have to adjust from the pedal itself or the gain on the amp. Some MM's have a really high output preamp like my Spector's, so you can just back off on the bass preamp & use more of the amps preamp.
This is a really good way, without knowing exactly how the power output of your amp relates to your cab's ability to handle it, to prevent any damage to your amp or cab.
The volume knob actually has a massive impact on your tone AND the signal your are sending to your amp (clipping, etc). The volume knob controls how much output you are feeding to your amp from your pickups. To put this in perspective, a lot of guitar and bass players that play rock, metal and heavy music put "hotter" pickups in their instruments so they can increase the output of their instrument to their amp. In other words, hotter pickups just have higher output and more output usually is not only louder, but has other sonic qualities such as more "boom" and being "heavier" because your pickups are jamming out more of their frequencies they are picking up from your strings. These signals also distort more easily and will clip your amp more easily at lower gain settings.
For example, if you turn the volume on your bass all the way up and put your amp volume at 3, it may very well be equally loud to you playing with the volume knob of your bass at halfway and the volume knob on your amp at 6. However, they will be drastically different tones. The former will tend to be more aggressive and powerful, while the latter will be more mellow and vintage. You can actually produce a wide range of tones by just messing around with the volume settings on your bass and on your amp. In general if you're playing rock, or loud music, you'll want your pickups all the way up, all the time, and adjust any volume on your amp. If you're playing R&B, Soul, Funk, Jazz or something of the sort, try experimenting you might be surprised at the different sounds you can get just playing with the volume settings on your instrument and your amp.
Long story short, if your amp is clipping really easily, try rolling back the volume on your bass to get more room to play with the gain and volume on your amp. Makes sense it's happening with a MM, as those pickups are pretty hot compared to say, a stock p-bass.