I'm not sure the question asked is quite what the OP wanted to know, and the discussion may have obscured this a bit. Though I'm no luthier at all, I do teach acoustics at a college level & here's my take:
1. There's a nomenclature problem here to clear up first : I assume by "fundamental" you mean fundamental in the true sense of the word. That is, for open A on a standard bass, 55Hz. Let's call this "f".
2. The overall amplitude of the fundamental will be dependent on a large number of factors, as stated in many posts already.
3. That said, all other things being equal, a shorter scale instrument tuned to the same pitch will produce a louder fundamental with respect to the overtone series. (2f, 3f, 4f, etc. up the tree.) This is because a string under higher tension will produce louder overtones (2f, 3f, 4f etc.) at the same pitch.
Don't take my word for it - record a few notes on instruments that have PU's at the same spot relative to the scale length (calculate that as a percetage) and analyze their frequencies in a program like Audition.
4. Longer scale lengths may be heard as more "ballsy" (insert favorite tone adjective here) for a variety of reasons, not the least of which is that the 2d overtone (2f) is often what ends up being perceived in the lowest register through many amplification systems anyway.
Again, don't take my word for it - try running a sine wave generator through your bass rig. (Sines have no overtones) & see what you get in terms of dB/SPL on the way out.
5. Further to this, you should take all factors into account (which some posters have). Your "sound" is the bass, strings, PU placement, how you hit it, tuning, amp, position of amp in the room and interaction of your amp with the room itself. Room modes can be the kiss of death, you know.
6. Lastly and perhaps most importantly, your ears do NOT have a linear response, especially in the bass end. The perceived amount of bass you hear varies with amplitude. Look up the "Fletcher-Munson Curves" sometime for more detail than I have time to do now.
So, in a sense, the majority in this poll are quite correct - there's more fundamental (as a percent of the total o/p) in a short scale bass, not less.
Hope this helps,
GT
Long time string manufacturer Daddario has another explanation concerning "How scale length affects sound" based on industry standards.
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I think we have to be careful with certain generalizations as there seems to be many factors affecting the overall sound of a bass, scale length again is just one factor that influences the fundamental. (Oh and by the way I don't take your word for it.)

when he take it from you.