Lots of things could have been done, but difficult to say without more info.
did the sound tech shut off the PA system and monitors completely? If yes, then there is no other explanation than stage/room acoustics, and you would need to adjust your bass rig - or move it to a different location (side fill off the stage) - to try to minimize the impact of this phenomena. Of course, you wouldn't be the only instrument in the room that would cause the acoustic excitement of just this one note (though the most likely), and even with no PA going, the band playing at full stage level would have been a mess if in fact it was an inherent room EQ problem.
I would look first to the drums, especially if they were being mic'd through the PA system (all drums) and especially if any drums were pumped through a drum monitor. This happens sometimes when the drums are "hard gated", and if the bass stage volume causes a drum head to ring, it will open the gate and keep it open as long as the note continues to sustain, due to the drum itself being tuned to (or near) the offending note. Muting the drums (in the monitors and FOH) would have revealed this if it were happening. A competent sound tech should have been able to navigate around this issue with some success, although it can be a dreadful situation for everyone when it happens. It may have also helped to minimize stage volume by running a DI feed to the FOH system, especially if stage acoustics were the culprit. You said you didn't do this, but IMHO it would have been worth a try.
JMHO...YMMV