If I understand correctly, and IMO, there are a few main reasons.
1. Cost. Creating a balanced signal (from any conventional pickup) requires either active circuitry or a balancing transformer, therefore it involves cost, (therefore Fender wouldn't do it,) therefore it is not done.
As had been said, Alembic has done it forever, but nearly no one else is interested.
2. Compatibility. Standard amps aren't built to accept the signal, standard cables aren't built to carry the signal.
3. History. People generally do not want change in certain areas. This includes probably most of musical instrument design. Think of all those standard Fenders and Fender-alikes, that vary little from the 50-year-old designs; the "vintage design" replicas, that mimic them as exactly as possible; the "vintage" pups that try to duplicate outdated methods and materials (scatter winding; "authentic" cloth braid over output wires; who cares what varnish is on the magnet wire, it's a damned dialectric!); the "vintaging" of brand new guitars.
4. Motivation. People expect guitars to buzz live, so there is no impetus for change. The Fender J bass could have been switched long ago to a pair of stacked humbuckers that sounded close enough to the original single coils allowing buzz-free use of a single pickup.