Ebony is often left unfinished by some builders. You always want to keep it 'well-hydrated' with non-petroleum lemon oil, linseed oil, any number of oils that will keep them in shape.
Otherwise, the right fingerboard in the wrong place can indeed dry out enough to crack, and shrink and develop some fret sprout in the process. Sometimes, the fret sprout can actually reverse and go away if it's a really dry piece and the sprout is just enough to feel it slightly.
This bass I would oil the fingerboard first, then see and address any fret sprout or other fingerboard issues after it's back in shape. I'd certainly look for some guidance from the builder, if he'll speak to it.
My Alembics were this way, and I used the F1 lemon oil.
This can be an overlooked setup problem. I have a Squire Jazz that I just had to touch up the setup every month or two, and I chalked it up to new wood that wood eventually settle in. Several months ago, I did a full setup with polishing the frets and oiling the rosewood board, and it just DRANK the F1 oil like a sailor on his first shore leave in months. Finally, it had enough, strung it back up, double checked my clearances . . . and it hasn't moved since. Dry fingerboard, who knew it would do that?