Sounds like they just wanted to over charge for something. If the pickups are too high, lower them. If the Bass has micro tilt, learn how it works. I went shim crazy a few years ago. Have since removed all except the non angled full pocket ones I make to give a little lower string height.
Yeah I figured as much too, I can probably just take it out if need be, a little worried about unbolting a neck that old etc, but I don’t think it’ll explode from doing so