This is usually only true if the engineer isn’t competent, or if someone in the band is intentionally making malicious mix decisions.
The bass on “Justice” is inaudible because Lars is a diva and turned the fader way down during the mix session: which is really a shame, because it’s arguably one of the best metal bass tones and performances ever recorded.
Check out modern metal bands like Meshuggah and Periphery, or even classic metal acts like Iron Maiden and Black Sabbath, and you’ll hear the bass and guitar have plenty of space to coexist and still sound powerful.
There are even stem remixes of “Justice” on YouTube that showcase how much better that record would have sounded with the bass left at an audible level.
Whether metal, or any other genre of music, and whether a live performance or a recording, there is no reason whatsoever for guitar, bass, and all other instruments and vocalizations, to not sound perfectly well-fitted to one another.
All it takes, is perhaps the greatest challenge of all: for the people in charge to check their ego's and see the forest for the trees.