I understand that, but it really shouldn't make a difference.
I'm sending the raw signal of the mic to the DAW, then using EQ, compression, etc after the fact.
I simply noticed that the tone coming from our kick mic, when recorded, sounds weak and thin. I don't really notice a lack of bass when mixing it live because I have it pumping through the sub.
Than it's a matter of post-recording (mix stage) processing. Allmost every kick sound I recorded was week sounding (compare with the modern music we hear on the radio). You have to use the right compression and eq settings and type.
Welcome to the mixing world. Ain't it fun?