Are they actual 5-string pickups, or are they 4-strings? I know Schecter puts 4-string HZ's in their 5-string basses, but the pickups are rail type and the Schecter's string spacing is narrow so it still 'works'.
Possibly those emg's are 4-string rail types and just not wide enough to get all they need on the widest strings.
That's my thought at least.
I had a 5-string Schecter model like that for a few days, but it had 2 jazzes in it. Loved the bass, but the truss rod was maxed (bottomed) out on it and I couldn't get near the action I prefer out of it. Even with shimming, etc.
I'm a big Schecter proponent, but sometimes they do some 'odd' things pickup wise. I recently got a very nice CV-5 with Jazz/Musicman configuration with Duncan Designed pickups in it. The pickups that came stock in the bass had poles wide enough that the narrow string spacing on the basses barely hit the inside of hte outer poles. Yet the stock hipshot bridge that came stock on the bass is narrower then the string through holes on the bass body. So a wider bridge 'could' be used, but if you used a wider bridge it would be pushing the string close to the edges of the neck. Again... just some 'questionable' thing.
However, the build quality I feel is great on the basses, so "I feel" they're worth the pickups or changes I choose to make to get them where I prefer.
I plan to get ahold of one of the 5-string tele type basses at some point... I think it would make a unique fretless. :-0