Could be a number of things. I don't use Pro Tools, but maybe it could related to issues common to any DAW situation. What exactly do you mean by decreased or weaker? Not as loud? Not as "full"? Either could be related to different processes. Some things to look for.
Is it something you can live with? In that case just turn up the volume.
- are you playing the wave file through the DAW software? Through MS media player? Something else? Sometimes different media players have a variety of output levels.
- Check the mixdown or export rendering process/algorithm. Maybe the default sets it at a certain level that can be adjusted - which brings us to..
- is the output level when monitoring "too high"? A WAV file is a rendered mishmash of memory bits - in a static form, for lack of a better way to put it. The DAW's job while rendering a WAV file is to make the bits "fit" within parameters optimized for playing through a digital output source without distortion. This is not the same thing as monitoring in real time, through a DAW.
- Are you recording and monitoring at 24bit? A WAV file generally is rendered at 16bit/44.1k, which could have an impact on the dynamic "feel" and range of the file.
- There is a reason people get paid to do mastering of stereo mixdown files. It takes a lot of know how to make a WAV file sound fat, loud, and punchy.
I'm sure someone could explain this in more technical terms than I could, and should correct me where I'm off. But maybe it'll help. Good luck figuring it out
EDIT: Oops can't believe I forgot about normalization. Are you normalizing and/or compressing your tracks? You may not hear it as much when recording or monitoring, but exporting generally adds quite a bit of buffering to keep from overloading/distorting on output. If you have a lot of dynamics, uneven attack, etc..., particularly with bass, it will sound small and weak on mixdown because the rendering algorithm buffers to the loudest passages, effectively lowering the overall level of the track. Mastering always involves some compression for this reason.
Always make sure your tracks are at least normalized before mixing down.