To offer my take on the original posters question...
I just don't think we have had enough famous songs with bass tones specific enough to the basses on which these types of preamps typically occur. Stanley Clarke and Phil Lesh are really the only bassists (I am sure there are others, like Jack Cassidy) the general public may have heard whose tones are specific to a filter based pre equipped instrument. Geddy Lee's Wal tone is definitely "Wal'ish" to a trained ear, but not enough so for the layperson to know and specifically seek out that sound. Same goes for Justin Chancellor. For those who do realize that tone is specific to a certain brand of instrument, the cost and rarity are usually prohibitive. Plus, its takes time to know your sound, how to get that sound, and how to get that sound out of "complex" electronics. I think a lot of bassists will pick up an Alembic or Wal and not instantly get that tone in their head, look at the price, and move on to something with which they are more familiar. Similar tones to Justin's and Geddy's can be gotten from other much less expensive instruments, especially when effects are taken into consideration.
Most producers are also looking specifically for a "Fender" sound, so most bass tones on albums are using a Fender pickup arrangement. We can find many basses to get that sound for entry level prices up to the extreme, but there is enough range that this configuration is profitable. There is no entry level filter equipped bass, or even mid level. This leaves the filters as a top shelf option to which most bassists will just never have the pleasure of being exposed (especially when a filter based pre and pickups is usually more expensive than many entry to mid level instruments).
Many bassists are also not fiddlers. Take Anthony Jackson for a famous example. That dude has been searching for one specific tone for most of his career and his bass configuration shows it. How many famous slappers are just a Jazz (or dual pickup bass), blended 50/50, with a bass and treble boost? Pretty much all of them. Or the P-bass with flats cult. Most players look for a certain response and that becomes their tone...forever. The flexibility and capability of the filter pre is just not widely necessitated.
I have also read (I think it was on ACG's website) one of the original selling points for the filters is that you could match the response of your favorite bass's pickups and essentially have a one bass solution to many popular tones. As stated above it is usually just more economical to buy that type of bass, or many basses, to cover that range of sounds. This leaves the filter equipped instruments to the true aficionados who must have the Alembic/Wal sound but may occasionally need something similar/close to Fender tones (as we have seen "similar" or "close" sometimes just are not good enough).
That leaves the filter pre (and associated brands) to the very niche market they currently occupy.
I will say though, a Wal with the neck pickup filter to its lowest freq setting, with the bridge pickup running full range, combined with the stereo blend, offers one of the fullest most unique bridge pickup tones I have heard/played. So much so that I am installing a stacked tone pot in my Zon so that I can have individual passive tones (pre dual band buffer to make so each pickup is unaffected) on each pickup to emulate what I got on that Wal.