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Good Bassists Dig Fine Ass
Playing through two octave scales and saying the note names as I played them. Once you get to the point that 8th note=120bpm and you're playing Db melodic minor, you'll be getting pretty solid...
As others have said, play through scales on the bass and SING, not say, the note names as you play. You want to make sure you sing them in as close of a pitch as you can get to the actual thing, since this allows you to internalize the note and get its sound stuck in your head.
What methods helped you guys the most?
Learn some theory so you understand (much more important than memorizing or "knowing" is to UNDERSTAND) the logic of the fingerboard. The strings are tuned a fourth apart. Each fret is a half-step.