Bummer. Well go ahead and try the other resistor I mentioned - the 1 meg across the preamp input. If the active-passive switch still pops after this, then you may have something wrong with another part of the wiring or possibly the preamp itself.
TBH, from a design pov, it's more likely (and understandable) for an input cap to be left floating than an output cap. Output caps are more likely to be polarised due to their larger capacitance and therefore need an earth resistor. Plus if a preamp was never designed for true-bypass active-passive switching, then the input cap will always have an ohmic earth connection through a pot or the pickup coil itself so that resistor is not really needed. On top of this, adding an input resistor will lower the input impedence of the preamp, and will very slightly alter the treble response, and possibly the sweep of the volume controls. That's why I always recommend tying the output first, and if that doesn't work, the input.
In the (pretty unlikely) event that you notice some tonal changes with the 1 meg resistor, you may actually be better off with a non-true bypass active-passive switch. But that's prety unlikely...