It doesn't. It compensates for the string stretch which is most noticable on the first few frets. This depends on the strings as well as the nut. I have a guitar that when you put flats on it, for example, the third fret G on the low E string is in tune. When you put rounds on it, the G pulls sharp and I have to put a sliver in to compensate.Just explain to me how a compensated nut can change the distance between any fret and the saddle.
Think about it: Delft, Earvana, Feiten, Philadelphia Luthier's Supply, EBMM, etc., all are systems of compensated nuts. They aren't just blowing smoke. Surprisingly, so does Gibson, they just never talk about it. The scale on many Gibson guitars that have the nominal 24 3/4 scale length is actually a shade less because the nut is compensated for the first few frets string stretch. I have had several Gibson guitars over the years that have had this.