One thing I have to throw in the mix is that, love or hate Fender the sheer size of the Corporation can not be compared to other companies like Carvin or Peavey. What works for them wont always work for a company 10 times larger.
Dealers are the reason why Fender is as big as it is, that and everyone buys a fender at some point...(I may flame myself writing for that). Going direct may have a small negative effect on the dealers but I see a lot more benefit. Ordering customs, hard to get/ rare, special orders will no longer be extra time/cost to the dealers. They can focus on selling MIM, MIA, non custom shops, squiers - the money makers for the stores. It keeps the trouble makers (us) dealing with the company direct with guys that I can only hope are specifically trained to talk musician. If we don't like it, the store doesn't have to deal with returns. Then strategically it will reduce sales to the small shops that take orders that start like "I just wanted a Fender built like...".