I have a custom p-bass with the body and neck dimensions of a '59 p-bass plus it is equiped with the gotoh 206 bridge.I once tried rotosound flats and i was really satisfied with the outcome.You should check them.There is also a Steve Harris signture set that is built from a different material(nickel\copper alloy)which might add a some twist in your sound.On the matter of the thru the body stringing i have come to believe that the thicker the string the more it's gong to be stressed and usually flats tend to be thicker than rounds.I think everything will be ok maybe adding a little relief on the neck will be necessary but i don't think you have any problems.
P.S.:Nice mods dude!!!That's a baslline on th neck right?
P.S.:Nice mods dude!!!That's a baslline on th neck right?