Kurt, if this is the Bajoni then it most likely has a Grafted neck. It is very possible that the Scroll was not grafted 100% straight to the new neck. I have seen this on many Basses. Today, many luthiers use a Lazer to assure as perfect alignment as possible. My Prescott is currently getting a Graft and will be aligned by Lazer. My Mystery Bass will also get a Graft by Paul but he doesn't use such modern things. It will be interesting to compare old and new schools of tools after both Jobs are done.
For now, just play your Bass as-is unless it has a problem. Then, go back and Audition somewhere. I wanna hear that you won the Job somewhere. You are too great a player to just hang around the city, do some subs and dwell on the Met experience. I wish I could play half as good as you. I also wish I had your Bass... lol