Got a 12" radius block from Stewmac, a couple of bone nuts, and a new wiring kit today.
I've sanded the board and taken it back to the rosewood. Using the radius block really highlighted the uneven surfaces of this board. it is now much flatter and truer. I need to check it carefully with the straighedge and make sure I have not sanded any bad spots into it. I don't think I have. My Wife even noticed how much better it felt and looked.
There is still a couple of the fretlines that are below the surface, but just barely. I think instead of going back again with the black dye I'm going to just tung oil it, to harden and protect the surface. Between having the board face blacked out, or harder, I'll go with the harder surface. There is a black stain at lowes that I had originally thought about using. (scratches chin)
I've been working on the neck pocket to get the neck to sit better. There is a ever so slight gap where one edge is not fully seated. I think once I get the neck sitting fully in the pocket, it may not need the shim, but we shall see.
I've got a few days off, so maybe I can get some work done on the new nut, and get the wiring taken care of. Get the neck bolted up and maybe play the darned thing.