Yeah I've been quietly walking a handful of people through it privately as well as implementing it on all builds from August onward, but the plan is to get a nice walk-through document put together and put up on the website.
Long story short, the problem is caused by the polarity protection I put on the power input to allow the pedals to accept either polarity, and that needs to be bypassed so the pedals become center negative only.
Long story long, I've used a couple different but similar components in that position based on availability, cost, etc., and even within the same component type there are going to be manufacturing tolerances that affect certain parameters. I haven't been able to find the exact number where the problem occurs, but basically what's happening is the circuit's ground is too far removed from the common power ground level. So you could have multiple sushi pedals with different ideas of what "ground" should be, which basically creates what we call a ground loop. If the diodes in the polarity protection were closely matched then they should still be at the same ground level and it wouldn't cause a problem, but when they're too different we see these problems. Also the ground level through this protection diode is going to differ based on the current pulled by the pedal, which means a pedal pulling more current, like a HW pedal compared to an SMD pedal, is going to be more different and more likely to have this ground loop issue.
It took me an embarrassingly long time to realize that this is what's been going on, and there's really no one to blame but me. The good news is that, like I said, it's an easy fix. You literally just disconnect the negative (most likely black) wire on your DC jack from the circuit board and connect it to the input jack sleeve instead. That's it. You move one wire and problem solved. The pedal will no longer work with a center positive power supply, but it still has inline polarity protection on the positive side so it will not be damaged and will still protect the circuit.