First, where are you located? Unless you're typing in a hurry it appears that English is not your first language (but probably better than my Spanish and Russian :0 ).
As far as the sound sample, it is really hard to tell because the technique and limited sampling of the single note make it difficult to really hear what the bass can do. You say you are a beginner, yet you have a $1500 bass and Apogee Duet. What do you mean when you say you are a "beginner"? If you have an Apogee you must have other guitar or keyboard experience.
Of all the things that can easily be fixed a missing screw in the pickguard is the most minor, but doesn't surprise me with Fender's quality control as of late. Every guitar tech in the world that works on electric basses has boxes of these screws and can easily fill put one in. If you think you aren't happy with the bass, return it while you can. With $1500 there are MANY basses that you can purchase, but much depends on your (unstated) location or country and what is available.
Disclaimer- my personal opinion to follow YMMV: I have owned and still own several Fender products. I currently own an American Deluxe Strat, a 1996 MIM Tele, a 2011 Squier VM70's jazz bass and a 2010 MIM Jazz5 bass. As I compare the current crop of Fender basses to what I own from 8 and 9 years ago, I think Fender has bigger problems than a missing PG screw here and there.