If you want to do this (setlist programming) via the editor you kind of can at the moment but it’s a bit of a workaround.
Reset the setlist to default via the pedal’s “ini” menu.
Put the pedal in VA mode (either via the editor or pedal).
Press “Download to FI”. Rearrange the VA patches into which of the 99 slots you want them to appear. Then press “upload to FI”.
Switch to FM and repeat the above process.
Obviously you will out your desired VA and FM patches in different slots from each other. Make a note of which slots you want the pedal to play a VA patch and which to play an FM one.
Now put the pedal in Setlist mode and go to each step and set whether it should be VA or FM by pressing the encoder (edit dial).
By default, setlist 1-50 is VA, 51-99 FM.
There might be a bug between editor and setlist mode. I haven’t checked this as currently the editor isn’t really designed to work in setlist mode.
Again I ask, how are you changing patches. I understand you are connected to the editor but running the pedal in setlist mode. Playing the editor keys is probably reverting to reading the non-setlist mode patch order, hence why you are experiencing odd behaviour.
@Andras Szalay I cannot check if FM mode is forcing the pedal ON when using setlist until later next week.