Thanks for the update to this @Turnaround.
I read the whole thread quite some time ago and can't recall if you discussed the position of the shim.
The luthier I used to use in Australia recommended putting any partial shim in between the mounting bolts (in the position shown in red below) rather than right at the end of the neck pocket (green). He theorised that if a shim could possibly cause a ski jump then putting it between the bolts as indicated would have much less chance of causing one.
I'm pretty sure that all my basses and guitars have a shim in them except for my Ibanez SR1200. For most of them it was not actually necessary as I could get a good low action without one, but that action meant the adjustment screws on the saddle height poked through and that's something I really don't like. A thin shim solved that and gave a better break angle over the saddles. Some of them have had that shim for well over 5 years and so far none have developed a ski jump.
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