I think EBMM introduced their new serial number system in 1987 - the same year they introduced the 3 band preamp.
I'm not sure how soon they offered the preamp swap service, but even if was straight off the bat, it seems unlikely that the new serial number system was introduced after the 3 band model was released ; it would make sense that they wanted a clean slate for the new product launch (3 band preamp, and 5 string bass), and had figured out the serial number system in advance.
This is the long winded way of saying 2 band instruments sent in for a 3 band refit, would have been completed by EBMM after they had figured out the serial numbers, and there is almost certainly a a record of those jobs kept by EBMM - the question is, did they record the instruments serial number in that documentation?
I think it's possible they did, as they usually ask for the instruments serial number, and the return of the original pickup / preamp etc, in the event that one fails, and you need to buy a replacement ; if they hadn't noted your instruments serial number when the refit was undertaken, they might insist on selling you a replacement 2 band preamp, or even refuse if you were returning a broken 3 band preamp, and the instrument should have a 2 band.
I'd e-mail EBMM customer service, and see if they have records of legacy preamp swaps, going back to 1987.