From what I can tell, the MK pickups are 108mm by 34mm. This is *very* close to the size of the Bartolini "P2" pickups (also called BC5) which are 108mm by 32mm. This means that just about any other pickups of the same dimensions will fit in the existing MK routes, with 1mm to spare on each side.
In addition to the excellent ND3 pickups that David (SGD) makes in this shape, here are a list of other P2 size pickups that I've seen.
Lane Poor JB4250, SB4250, HB4250
Seymour Duncan ASB-5
Bartolini P2 pickups, including P25CBC, XXP25C, XXP25M, XXP26C, XXP26M, 72P25C
Carvin J99AS, H50AS, SP
Villex P2 shape (custom order)
Nordstrand 5-string pickups including Big Singles, Fat Stacks, Big Splits, Dual Coils
Delano SBC "Driver Edition"
For some of the quad-coil or split-coil pickups advertised as being for 5-string or 6-string (e.g. Seymour Duncan, Bartolini, Nordstrand) you will probably need to confirm the shape of the armatures inside, to make sure they work with your strings. Most quad-coil or split-coil pickups have a small gap between the armatures where strings won't be properly covered. Bartolini solves this by making them with gaps between A and D strings, either for 5-string or 6-string, depending on the model. You can use some "magnetic paper" to confirm that the strings don't sit above this gap. Bartolini dual-coil pickups don't have this issue, since the armatures usually go all the way across the pickup.
For Nordstrand soapbar pickups, you're probably only going to be able to use these with a 5-string bass.
So there are a good number of options out there, each with their own sound and tonal characteristics.