Although the rails thing is cool, I wouldn't get hung up on moving the pickups laterally.
I have seen PilotJones work out the most complicated scale equations you can think of. He knows loads about physics. And he's in your thread already. If you told him the scale length, gauge of strings and value of the pick up, he could probably tell you within a thou where to drop those babies.
What might be more important is pickup height.
Lots of bass pickups were furnished with adjustable pole pieces, because the manufacturers were unable or unwilling to balance multiple strings in one pickup. You have the challenge of balancing 6 pickups. YMMV as i don't know if guitars are as sensitive to pickup height as bass.
I have seen PilotJones work out the most complicated scale equations you can think of. He knows loads about physics. And he's in your thread already. If you told him the scale length, gauge of strings and value of the pick up, he could probably tell you within a thou where to drop those babies.
What might be more important is pickup height.
Lots of bass pickups were furnished with adjustable pole pieces, because the manufacturers were unable or unwilling to balance multiple strings in one pickup. You have the challenge of balancing 6 pickups. YMMV as i don't know if guitars are as sensitive to pickup height as bass.

