Yes, I understand how dead spots work with regard to antiresonance, but I'm personally more interested in my last line:
"It would be interesting to understand some of the engineering approaches that could be utilized to somewhat predictably alter the coupled oscillator relationship and eliminate dead spots."
Any thoughts?
1) Semantics - as you're asking an Engineer, I'll say that we use the word resonator to describe what we have here - the strings and the neck resonate, which means they move in repetitive motions, but they die out over time. An oscillator is a device with includes some means of supplying energy on an ongoing basis, so the thing will run continuously, (without dying out). A bass with good sustain is a resonator, a bass in feedback though the PA is an oscillator.
OK, that nit pick out of the way,
There isn't a practical way of making a neck that has no resonances. Thus, you're not really going to get rid of dead spots, you're going to manage them. Wood is a very special material - if you look at the periodic table of elements, there aren't any solid (at room temperature) elemental things that are in the same density range. So, you're going to be working with something hollow or a composite structure with a lot of spaces in it as a material. You want something that, assuming it has non - isotropic properties (hollow or fibrous structures tend to be non - isotropic) has stiffness oriented in the one direction you really need it - along the length of the neck. Wood is actually a very good material for our purposes, and reinforcing it with something to deal with constant stress (a truss rod) is a good strategy. So, you find species that are stiff enough and not too heavy; what you get with those stiffness and mass properties is something that is resonant in line with them. Wood has the advantage of having some damping (a lot of other materials have less) which reduces some of the resonance issues.
Once you've decided on a wood species (maple is a good choice generally), then you have geometry to deal with. A floppy neck is generally a poor neck - not much sustain, and more obvious dead spots - a Fender J neck without reinforcement rods is a good example of this, but there are necks that are even floppier (Ibanez trades off stiffness for a very thin neck - they play "fast" (according to folks with small hands at least), but you gotta play a lot of notes to cover the short sustain.
Last, but not least, you put some tuners on it - tuners are a mass load on the end of the cantilever that is your neck, and they affect the frequency at which it resonates by virtue of how much mass they add.
Once all this is decided, you now have a neck system that you can start your experimentation with. As the math that tells you what resonant frequency a neck is has square roots in it, things don't move too fast - you may need to make big changes to various parameters to change the resonant frequency significantly.
OK, you take that neck mount it to a body, and start vibrating it. With the right instrumentation, you can find the resonant frequencies of the neck - the lowest one (where the whole neck moves together) is usually not a problem, except some headless designs will have an issue with this around the open A string - the worst (by far) dead spot I have ever encountered on a bass was the open A on a headless bass.
The next mode is the one that we're most familiar with - the neck moves in two sections - the headstock is moving one direction, most of the rest of the neck is moving the opposite direction. The frequency is typically somewhere around the C - the 5th fret on the G string. If the spot where it moves the most is also at the same fret that corresponds to that resonant frequency, you have an obvious classic dead spot.
There are really only three strategies that are useful in helping this:
1 & 2) - You either try to tune the neck frequency up, or down - either way, you're trying to separate the resonant frequency of the neck from lining up with the fret where the string has that frequency on it. I have had good luck with moving thing higher w.r.t. resonant frequencies. To do this, you use a bigger neck (more stiffness due to the thicker cross section) and/or a stiffer species (roasted maple is stiffer than regular maple) or a lighter species - roasted maple, is lighter then regular maple, this is unusual, but very good, in that lighter woods typically are less stiff. Less mass loading on the headstock (a smaller headstock, and/or lighter tuners) is also helpful in driving the resonance up. On my basses, I don't one of these things, I do ALL of them, and it helps. If you want to tune things the other way, people have often added weight to a headstock. As I don't like heavy basses or neck dive, I don't favor this approach.
3) You tune the strings to different pitches - this has the same effect as the first two strategies, in that you're getting things to hopefully not line up. When you try a bass out at a store, the FIRST thing you should do is tune it to pitch - it it isn[t to pitch, it can heave dead spots that you will completely miss. At one point, I had a bass that I kept tuned to D standard - the neck was more consistent in that tuning than in E standard, so I chose it as the bass that got that tuning. Keep in mind that re-tuning is not necessarily a panacea - if you lower the tuning enough, the lowest resonant frequency of the neck (which is usually tuned a bit below the open A string) can start to creep in and make your "downtuned A" string (which might be G or lower) into a dead spot. If Leo had experimented enough with dead spots he might have decided that bass guitar should be tuned to a slightly different range.
One other note - changing the length of the neck also retunes it. i have a Squier Bronco I bought as a beater, and darn if the much shorter neck doesn't hide whatever dead spots it might have extremely well - my main basses have "areas of reduced sustain" that almost noone would call a dead spot, but they are noticeable if you really know what to listen for. That Bronco is even more consistent sustain wise than my main (much more expensive) basses (it does, admittedly have a bit less sustain overall, but it's very consistent.