Considering favored pu on a two pu bass - I approach each situation it will be used in independently. The way a bass sounds recorded and/or live in a particular space will dictate adjusting/dialing in and how whichever particular bass is chosen. As no two basses will sound the same with the same adjustments/settings - the recording situation/room/engineer, the live space/situation (packed room, open space, low/high ceiling etc) will dictate (for me) how to achieve the sound/tone I want on the bass I chose to play. Needless to say, the amp and signal-chain chosen also adds adjustment capability. Personally I like both hum-buckers & single-coils, and both dual pu basses and single pu basses. For what it's worth, I also like both maple and rosewood/ebony fb necks, and walnut, mahogany and wedge necks. I also like both wide-nut necks and narrow nut necks. Add to that any fret number (20/22/24) and a few different neck profiles. Same with body woods - I like alder, mahogany, ash, and maple. And scale - 30"/32" and 34" are all good.
When I only had my '63 II (over 40 years ago), I was pretty bias against playing any other bass. (plus I couldn't afford another bass anyway!) After years of playing/owning all sorts of basses - it has allowed me to be open to more than one-way. Nearly impossible to 'rate' them numerically - and don't feel a need to anyway. Each different bass I play inspires me to play differently. Keeps me fresh and engaged as a player.