"What do you use to guide yourself to set the height of the string?"
Assuming that I am aiming for the lowest possible action that I can get, I set the string heigth for the lowest string heigth that I can and not have fret buzz. I do this AFTER I set the relief for the least amount of buzz on the first few frets from the nut. At that point I adjust the saddle heigth as low as I can get them without introducing buzz in the highest notes on the neck. At this point I adjust the intonation. Adjusting the intonation at this point doesn't affect the string heigth.
"Is it the surface of the fingerboard that the fret sit on or the back of the neck? "
Please explain how one sets the string heigth using the back of the neck.
So you are telling me that a flat fingerboard will have the same intonation as a radiused fingerboard and the pattern of the position of the saddle on the bridge will be exactly the same?
It will have exactly the same intonation.
Nowhere did I even mention saddle positions in relation to intonation. It doesn't really matter what thier positions are as long as the intonation is correct. The original poster does, however, have an odd looking pattern for an instrument that is intonated properly.
Enough arguing we don't have the same way of seeing things
Keep arguing with yourself like you said
"I do know what I'm talking about"[/QUOTE
I'm not arguing. I'm simply stating the facts. Setup is not something that you can just make a judgement call and even hope to get it right.
Yes, we don't see things the same way. Yes, I do know what I'm talking about. I am nearly seventy years old and have been doing setup both professionally and, of course, on my own instruments for an awfully lot of years. In fact I started doing setup work when the first electric basses came out and did quite a bit of setup work on double basses and cellos before the electric bass was even a gleam in Leos' mind.
If you are a luthier, I am very surprised at some of the statements that you've made in this thread.
Anyway, no hard feelings on my part. We'll just agree to disagree.