A misaligned neck can be easily remedied at home. Loosen the neck screws just slightly and then pull the headstock towards the E string side. This will pivot the neck in the pocket just slightly and should be enough to get the strings in line. Then retighten the neck screws. It’s highly unlikely that the neck pocket or any part of a bass cut and drilled primarily by CNC is going to be that out of alignment.
I went through the same issue. I ended up getting a set of Ibanez Mikro strings, plus a single .045 nickel roundwound G string. Because the Mikro G string is too short. All the others fit fine.