This has been a thing since the industry has not quite settled out as to which will be the 'standard' 5-string Precision pickup pattern. Yamaha and Fender have chosen to go with the 3 + 2 shape, and most everyone else a 3 + 3 pattern; and as others have pointed out, the traditional 4-string size that just happens to cover narrow five-string widths.
IIRC, Fender winds the two halves of their five-string Precision pickup differently with different magnets. I know as much about pickup design as I do about disarming a nuclear weapon, but after this discussion, I see how they feel that might be necessary.
When Squier issued their Precision Five version several years ago (and obviously promptly pulled it because it was THAT good, try and find a used one), of course the usual
'gee, it's a Squier, I MUST upgrade the pickup, etc.' discussion came up, and the consensus eventually came to 'well, you can, but there's not that big a difference'.
Squier Vintage Modified Precision V: who's got one? | TalkBass.com
God Rest His Soul, but Chef started that one. If you have the patience, big parts of these pages are about thrashing around about what's the 'best' P pickup for the beast, with not a lot of agreement or any real answer.
So I own one of those Squier P5's. Box stock, the one thing probably worth changing is the Hipshot replacement bridge (drop-in, exactly the same 6-screw mounting pattern) if you feel you need it, but the pickup is fine. I toyed with going PJ with Seymour's Quarter Pounder Five set for this, or maybe upgrading just the OEM pickup as Jimmy's doing, but so far, I can't find much of a reason to do it, it just works, and it's at least as quiet as any other P Bass I've played. I suppose I could foil line it, better pots, etc., but so far I just don't feel compelled to do it. It simply plays and sounds like a Precision Bass . . . . with a somewhat bigger neck and some extra low notes and easier fingering.
Something I had not considered with the current crop of Yamaha BB's: With no fanfare whatsoever, after years of that blade bridge pickups and often P pickups that were just different enough that no one offered drop-in replacements (
this is why you often see 80's BB's with hacked-up pickup routs for some other pickup installation), these now all use standard pickup routs. Smart, but I miss the visuals of the old ones.