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About string action of Neck-Thru Bass

Hello, everyone. I've encountered a tricky problem.
My bass model is StingRay 3 EQ HH, its neck is already straightened, and the action at the 12th fret of the 4th string is 2.4mm. It feels a bit too high for me. The bridge saddle for the 4th string is already at its lowest position. I originally planned to add a shim at the neck joint to adjust the string height, but I found that the neck of my bass is non-removable.
In this situation, are there any other ways to fix the issue of high string action?

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A straight neck is not the goal. You want the neck and bridge adjusted to give you the string height you prefer without fret buzz. Read up on guitar / bass setups.
There’s a great explanation in the Thunderbird wiki on this site although the bridge details won’t apply.
 
Caveat: it's not reversible but the saddles can always be replaced.
...the saddles can always be raised if needed and for a neck-through or set-neck bass I doubt they'll ever have to be raised so high you'll wish the slots were shallower. With a bolt-on it's always possible that a replacement neck will be thicker and need the bridge raised quite a bit.
 
You have a neck-through Stingray???

 
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Some bridges have bigger diameter bridge saddles (which leads to this very problem) - yours looks like one of those. You can either get smaller diameter saddles, or file the underside of the ones you have.
 
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Wow! I never knew EBMM made any neck-throughs.
 
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You also need to consider the nut. There are a few approaches, but I've found that when fretting the 3rd fret of each string, the string should be just above the 1st fret. I use a post-it-note sheet to check on tolerances. It should just grab slipping between the string & fret.
 
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1. Are you the first owner? If so, when did you buy it?

2. Has the problem been there all along or is it a recent one? If a recent one, was there something done to the instrument that might have caused the problem?

3. You say the neck is "already straightened". Who did that, and was it done by someone who knows how to do the process correctly? Was the adjustment to correct a bow, or to correct a hump?

4. Under good strong lighting, sight down the fretboard from the headstock toward the bridge. Does it look perfectly flat or is there a bow in it?