I think a lot of people would argue that your babies came from the best era. I would be surprised if you found another SVT you liked better.
I knew about the PT being replaced before I got the amp; I didn't worry about it because it's a very high quality transformer and most of the sound comes from the OT instead of the PT. I wouldn't have bought the amp if I knew the tech ordered the wrong transformer and installed it in the wrong orientation. He had to move the preamp forward 1/2 inch so it would clear the top of the PT. Unfortunately the close proximity of the preamp and the transformer induces a little extra hum. If not for the noise of the typical SVT fan, the hum would be totally unacceptable. You can barely hear it over the fan, so I don't worry about it too much.
I have a kit to remount the PT in the proper orientation but it is a very involved process that involves completely removing the PT from the amp, removing and replacing the transformer end caps and chassis mount, and finally reinstalling the PT in the amp. I could probably do this over a couple of days, but what a hassle!
The Skunk has less hum than any SVT I have come across. Volume wise I think the Skunk and the 6146 are pretty close, but the 6146 is definitely a bit more compressed. The compression could be because of the big resistor used to tame the screen voltage, or possibly it might need a complete cap job. Channel 1 gain is pretty similar between both amps. Both amps start to grind a bit around 10 o'clock and would be totally distorted by 12. The 6146 has significantly lower gain on channel 2. Due to the compression, I think the 6146 sounds slightly better for slap and the Skunk slightly better for finger style.