I had to revisit this thread after checking out this guy's website. The standard of the guitars pictured there looks much better than the OPs but when looking closely at the pics it also looks like several of the glossy finish instruments have small imperfections, scratches, dings. Maybe he's not very good with that type of finish? Any imperfections would be far less visible with the more "rustic" finishes, which seems to be more his style?
Even so, this doesn't excuse things like dots that don't line up properly, messy soldering, etc. Personally I would expect a full refund.