It makes sense to me that an end grain-to-end grain glue joint can be stronger than a side grain-to-side grain glue joint, if all else is equal. The glue will probably get a better grip into the fibers of the wood in the end grain.
But.....That depends on several big factors. Like GilmourisGod said, a critical thing is that the glue doesn't soak in to the end grain too much and starve the joint. Likewise, if there's any gap filled with glue, the glue needs be able to fully cure. Many woodworking glues have a real problem curing in the middle of a joint, if they can't get enough moisture and air.
*Side note: I've got an upcoming thread about that. Some interesting things that Rob Allen and I discovered about gluing roasted maple.
The other factor about an end grain butt joint is that it's usually very small cross-sectional surface area. As compared to most side grain joints, which have much more contact area. The butt joint, in bending, will have very tensile load on one side. And we know from experience that a glued butt joint will break easily in bending. A fair test is a side-grain joint of the same cross-sectional size and area. In that test, I can believe that the end grain joint will be stronger.
The scarf joints commonly used in instrument necks are actually half-and-half; end grain glued to side grain!