I think I've
finally got everything where I want it...
This started out on a PedalTrain Nano, then a Mini, and then I just gave up and went to the Junior, so I could fit the power supplies down below.
The order is: Tuner -> Phaser -> Deep Fryer -> Envelope Filter -> Micro Thumpinator -> Compressor -> Turbo Tube Screamer -> VT Bass -> Chorus.
The DS9TX has the AnalogMan Silver mod and a Jack DeVille Clickless True-Bypass switch. The chorus has the fixed Deep mod and a mix knob.
I use the Barber Deep Fryer for "Live at Leeds" Entwistle-style `60's overdrive and to fuzz up the envelope filter. The VT Bass is for SVT and B-15 sounds, and I use the Tube Screamer for a little bit of fattening and grit. The Deep Fryer can also do a great tube amp simulation or mild tube grind, but since I play through a really clean Fender tube head, I really didn't need a straight-up "tube emulator," just something to dirty it up a bit.
I played around with the pedal order for quite a few months before settling on the current layout. Although it's not terribly practical, I just love the sound of the phaser (maybe it reminds me of `70's RUSH...). So, after being on and off the board a few times, it's probably back for good. Although I like the chorus at the end of the chain, I think the phaser sounds more organic when placed before all of the other effects...less "effect-y." The envelope filter sounds terrible before dirt, but it also didn't work well after the compressor and the buffers in the Micro Thumpinator and the VT Bass, so I moved it closer to the front, with only true bypass pedals ahead of it.
I originally had the compressor near the end of the chain, but found that the dirt pedals caused a jump in volume when engaged before the compressor, so I moved it as far forward as I could. The compressor is about the only "always-on" pedal, followed by the TS9DX. I usually have the VT Bass set for a very distinct overdriven SVT tone, so it's not something that I leave on constantly. So far, this setup seems to be a good compromise between flexibility and simplicity.
Gut shot: