Speaking of rod rattle, I had the same thing happen on my fretless.
Used an LMI dual action truss rod & was naive to the fact that the rubber heat shrink wouldn't be enough to quell the damn rattle (which was only pronounced at certain frequencies).
If I would have paid attention to their instruction video, they say (almost as an afterthought) that the rubber is supposed to help prevent rod buzz, BUT "if you are still worried about vibration, you can run a small bead of caulking in the bottom of the channel"...
If you ask me, that instruction should be printed in bold red lettering in the item description!
Oh well... Live and learn.
But this is the main reason that my walnut fretless will never be sold to anyone! (well, besides the fact that I really like it myself)

When I performed the fix, my drill bit walked on me a bit because of the radius, despite the dimple I put in the exact center. I shoulda used a brad tip bit, but was kinda sketchy about drilling into the rod with it.
Then...even though I took the plug from the same area in the cut out of the neck, and should have blended seamlessly ...I made another HUGE blunder...i used CA glue to install it. Even though I knew full well that CA bleeds into and darkens bubinga. At that point I didn't even bother trying to get the plug to soak up as much oil as the neck did... So it's light, with a ring around it!
Definitely not my proudest moment!