Got my amp back from the tech and managed to get a rundown on things.
First off, clarification on my bias circuit. I misunderstood what he was saying. Mine actually had a problem and needed replacing, Fender supplied a new one free because it is a "known issue". Not like I said previously that it was junked and replaced without reason. My bad
He ran me through the theory of replacing SB tubes in pairs and this is how I understand it ...
The tubes operate in two groups of three, 1A 2A and 3A on one side and 1B 2B and 3B on the other side. The two sides need to match one another to operate properly, the thing that needs to match is called mutual inductance. The amp should leave the factory with all six power tubes close matched, but over time they will drift out of spec. The auto-bias circuit compensates for the drift but only up to a certain point, when one or more tubes drift too far off spec it can no longer compensate. This is when you get orange and red lights showing.
Mutual inductance is the thing that is measured when sellers grade tubes. So when they refer to a pair being of "the same grade" they are saying they are matched for mutual inductance.
If you need to replace one tube because it's drifted too far off spec or it just goes bad, you need to replace it's partner as well. Both new tubes need to be matched for mutual inductance in order to keep the TOTAL of the two A and B sides matching.
This is also the reason for the tubes being fused in pairs. Eg if 2A suddenly has a problem ... the fuse for the 2A and 2B pair will pop, switching off the pair. That way the total mutual inductance for both sides stays matched and the amp can continue to operate.
I've done my best to translate what I was told and it's giving me a headache

, I'm a looooong way from being clued up on this stuff myself.