That seems like a very good start then. At the moment I'm very hesitant to update my firmware in case something screws up before my gig (and also because I've midterm exams coming up and I won't have time to troubleshoot), but I'd say that's good enough to start thinking about workarounds.
Other than your OFD problem, you don't have any problems if you -don't- try to save a new patch on the fly, right? Also, from what I've read of your posts, am I right to say that this problem only turns up on your Manta? i.e. none of your other pedals have the problem where, you load a scene that overwrites the internal presets, and then when you try to save a new preset it doesn't save.
IF there is no hardware or other problem with the Manta (and I'm hoping so), my guess would be that the new firmware uses a different mechanism to save the scene to the Manta (rather than, say, loading the scene and then sending a simulated footswitch press-and-hold signal to the Manta to make it save the scene), and this clashes with saving a new patch.
So, my blanket answer here is that I haven't tested every permutation and I was just trying a bunch of things to first replicate the problem and then fix it. Let me try and lay it out in very simple terms.
MANTA:
(1) I experienced the behavior shown in the video a few nights ago
(2) Last night, I fired up my board and immediately tried to save to Preset 2. It worked. ("Maybe I am crazy"/"They'll never believe me" I thought.)
(3) Then I started playing around just in general, including switching some scenes. I don't remember if I was doing this with my iPad (I use MIDI Designer into a M-Audio USB-MIDI converter) or with my laptop hooked up. But eventually both were hooked up.
(4) At some point I eventually thought "I should try saving the preset again" and then experienced the video behavior again (and that's when I recorded it).
So I'm not really sure what all I did during Step (3). For the OFD issue, I know a little more about what exactly happened.
OFD:
(1) I had a new sound I wanted to save.
(2) I went to the scene where I wanted to save it (using iPad/Hub).
(3) I dialed in the sound.
(4) I held the "Save" button
(5) I started experiencing the behavior shown in the video, and recorded it
(6) It continued until I hooked up my Hub to my laptop, opened the Hub Manager, and starting changing scenes. Then it finally stopped.
So again, I don't know exactly what did it. But that's what happened to the best of my recollection.
I noticed something about your video that may or may not make a huge difference. Normally, before any changes are made, the LED should NOT be blinking. But I noticed that throughout, no matter what settings it's on, whether it's just engaged or after you made some changes, your LED keeps blinking at the same rate, suggesting that the Manta considers that some change has been done. I don't know how the programming keeps track of changes, but it suggests to me that something's going wrong there.
Ah, yes, I did notice this. I didn't know what to make of it, but I noticed it. I don't think they were doing that when I was able to successfully save the preset.