The control plate isn't misaligned. After seeing the picture of my Lindsey posted in this thread and context, I sat down with it to check--never notiiced anything before you mentioned that mine was the same. Anyway, the "misalignment" is realy just a slight (about 1/4", tapering to ~0) extra width of the body just under the "waist" and tapering to no difference by the end of the control plate. This gives the bass a very slighltly higher G-side waist, which in the pictures makes the control plate appear misaligned.
Probably not an important distinction to you, as the net visual effect is the same. However, I'm certain the appearnce could've been changed with merely a little sanding/routing and repainting. As for the binding (off-white/parchment (?) vs white), I do recall from your posts that you might not have been sufficiently specific when ordering the bass.
In my case, I never asked Ben for an exact copy of any year Fender,
and I wouldn't change one thing on my Lindsey. In your case, I think Ben has demonstrated just how seriously he takes his committment to
his customers.
This isn't my first custom bass. I wanted a Fender-clone bass. This means that having a Fender body properly shaped so the control plate aligns with the contour of the body is a given. I shouldn't have to spec that in my order.
As for the binding, white is not parchment and parchment isn't white. When I talked to Ben about this in November, I said "one of the reasons that I want a custom bass rather than just refinishing my current Fender is that my current Fender has the off white binding. I'd like to get one with regular white binding more similar to the white pick guard," (or something very similar to that. When it came time to order, I specified white binding. At this point, there shouldn't have been a problem, but it happens and I understand that.
I also specifically asked for a bass that was sub 9 lbs and that balanced well on the strap. That was part of the order, otherwise I'd get my bass somewhere else that could fulfill these specifications or I'd forget a custom order completely and wait till I find the right one in a shop somewhere.
Obviously, there were some communication errors somewhere along the line. Ben has done a great job of making sure I get what I ordered.
In the beginning, I wanted a '75 Fender clone, and we settled on a 10" radius neck. So it should look and feel like a 75 Fender (or better, actually). Ben decided to go with a more modern feeling neck. I OK'd that. I like the feel of modern necks. However, when we went with the modern neck somewhere the issue of weight and balance got missed. The body was slightly too light and the neck slightly too heavy.
Given that the 70's style body Ben has been using is slightly off in comparison with a Fender 70's body, we agreed to go ahead and just use the 60's body which we know is the right shape. That's the "fix" we determined would work for this build to get it to the specs I ordered (minus the 70's pickup location, of course, which is fine with me). But we can't just change the body out for a heavier one because that would make the bass well above 9 lbs. which is not what I ordered. The only conclusion is to start from scratch.
Looking back on this thread and on the original specs sheet I sent Ben, I feel confident that I included ample specs to get the Fender-style jazz bass of my dreams. The first one didn't align with those specs, but I'm sure the second one will. Ben rocks.