Yeah so it sounds like you are using "Device Mode" for each pedal to scroll through its internal presets. If you want to scroll through presets in that mode with a default "engage" or "disengage" message sent on each scroll I believe you have to do it the way I mentioned in my first reply (unless using the Hub somehow changes this functionality)- holding down the left button of the DMC (I assume), which will change the default bypass mode (and you should see a dot on the DMC screen go away). He actually goes through this around 8:30 on the above video.
"Preset Mode" on the DMC means creating presets within the DMC where you can send messages to all the pedals connected at once, with both the internal preset for each pedal you want and the bypass state of each pedal- maybe when using the Hub it makes more sense to use the Hub for this purpose though?
Good points, I'm still a newbie at this so right now just being able to scroll through each pedal is enough, I really haven't gone any deeper than that. Like I said I was only using the Micro for scrolling the C4 presets before this afternoon. I have a gig tomorrow night, gonna keep it simple for now, lessen my chance for error and keep the BL stinkeye to a minimum, lol.